Unveiling Microbial Magic: Ideonella and the Art of Plastic Recycling

Daffa Dewa Saputra
8 min readAug 16, 2023

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Continuing the thread from my previous article on plastic recycling, urgency intensifies in the search for sustainable solutions. Amid the plastic production and waste surge, the spotlight on the plastic recycling landscape grows brighter. In 2018, global plastic production hit 359 million metric tons, adding to a staggering 8.3 billion metric tons over time (Geyer et al., 2017). Projections indicate primary plastic output could soar to 1,100 million metric tons by 2050 (United Nations Environment Programme, 2017). Yet, recycling rates remain dismal, with under 10% of the 8 billion metric tons of plastic waste being recycled. This production-recycling gap presents profound environmental and economic challenges.

Photo by Teslariu Mihai on Unsplash

Polyethylene terephthalate (PET) is a major contributor to this dilemma, with yearly output reaching 82 million metric tons, catering to single-use beverage bottles, packaging, textiles, and other applications (National Renewable Energy Laboratory, 2021). In 2021, PET packaging accounted for 44.7% of US single-serve beverage packaging, significantly adding to global solid waste by 12% (Benyathiar et al., 2022). While PET is one of the most recycled polymers in the world, with over 680 kilotons of old PET bottles and containers recycled in the United States each year (United States Environmental Protection Agency, 2023), its resistance to natural breakdown poses a challenging obstacle (Qi et al., 2022). PET’s persistence in the environment necessitates novel, long-term solutions.

In the face of these complexities, the revelation of a “plastic-eating” bacteria, Ideonella sakaiensis, offers hope. These bacteria’s extraordinary capacity to degrade PET promises to reshape plastic recycling strategies. This article explores Ideonella sakaiensis, unraveling the scientific mechanisms that empower it to break down PET. By delving into this groundbreaking discovery, we illuminate its potential to redefine plastic waste management, ushering in a more sustainable future.

The Discovery of the “Superpowered” Bacteria

Ideonella sakaiensis’ story begins with a simple silt sample obtained near a plastic bottle recycling plant in Sakai City, Japan (Yoshida et al., 2016). A team led by Kohei Oda of the Kyoto Institute of Technology and Kenji Miyamoto of Keio University found it in 2016. Ideonella sakaiensis belongs to the Ideonella genus and the Comamonadaceae family; they have a remarkable ability: they can break down and use PET plastic as a carbon and energy source. A photograph shown in Figure 1 displays a false-color scanning electron microscopy (SEM) image of Ideonella sakaiensis (Yoshida et al., 2016).

Figure 1. Ideonella sakaiensis in false-color SEM (scanning electron microscopy) photograph (Yoshida et al., 2016)

Ideonella sakaiensis completely degrade PET plastic back into its’ monomers, which are chemically useful compounds, namely terephthalic acid (TPA) and ethylene glycol (EG). This discovery of “plastic-eating” bacteria can potentially revolutionize plastic waste management and provide a long-term solution to plastic pollution. However, the question remains: how are they doing that?

Now, we will explore the mechanisms underpinning Ideonella sakaiensis’ extraordinary plastic breakdown ability.

Uncovering PET’s Enzymatic Degradation

Peering into Ideonella sakaiensis’ journey of PET plastic degradation, a captivating enzymatic pathway unfolds, choreographed by two pivotal agents: PETase and MHETase (Hachisuka et al., 2021; Joo et al., 2018; Kalathil et al., 2022; Palm et al., 2019). Together, these enzymes orchestrate the intricate breakdown of PET into fundamental chemical bulding blocks.

PETase: Pioneering the Initial Breakdown

At the forefront of this chemical ballet is PETase. Initially, Ideonella sakaiensis attach to the surface of PET and secretes extracellular PETases, an enzyme catalyzing the conversion of PET into two essential compounds: mono-(2-hydroxyethyl) terephthalic acid (MHET) and bis-(2-hydroxyethyl) terephthalic acid (BHET). BHET, the minor product, is converted into MHET through the same enzymatic process. Furthermore, it was also found that PETase can directly turn PET into its’ monomers, which are TPA and EG.

Figure 2. Structure of PETase Enzyme (Joo et al., 2018)

PETase’s optimal substrate binding site can accommodate up to four MHET moieties. In addition to that, PETase boasts a catalytic triad (Ser-His-Asp) at its active locus, comprising specialized amino acids arranging PET’s break down. This catalytic triad underscores the enzyme’s adaptability and precision in igniting the process of plastic degradation.

MHETase: Meticulous Breakdown to Building Block Molecules

Figure 3. Structure of MHETase Enzyme (Palm et al., 2019)

PETase’s work is aided by MHETase, an efficient collaborator in this enzymatic duet. MHETase takes over from PETase and continues to degrade MHET into progressively smaller bits. The MHET produced from the first step is subsequently carried into the periplasm by an outer membrane protein called porin. The MHET is then hydrolyzed by MHETase, an intracellular lipoprotein, to TPA and EG .

Figure 4. Enzymatic Reaction Scheme for PET Degradation

As illustrated in Figure 4, the harmonious duet of both enzymes crescendos in creating two substantial compounds. These end products bear immense potential, poised not only to be harnessed in producing fresh PET plastic but also for versatile upcycling into a spectrum of other valuable chemicals.

Harnessing Ideonella sakaiensis’s Potential

The synthesis of TPA and ethylene glycol is at the heart of this newfound potential. Their significance lies in their potential to regenerate PET and their adaptability to be harnessed for diverse chemical synthesis endeavors. This affords a remarkable opportunity to mitigate plastic waste while nurturing the creation of new value from discarded materials.

Vanillin Production

One avenue of exploration stems from the direct utilization of TPA, a product of PET degradation, in the production of vanillin. Sadler and Wallace’s (2021) groundbreaking work in 2022 showcases engineered Escherichia coli’s prowess, converting TPA into vanillin with an astounding 79% conversion rate. This represents a pioneering stride towards the biological upcycling of post-consumer plastic waste into consumable products.

Photo by Joanna Lopez on Unsplash

Electricity Generation

The symbiotic alliance between Ideonella sakaiensis and Geobacter sulfurreducens ushers in an electrifying prospect. Co-culturing these two organisms not only drives the breakdown of PET and ethylene glycol but also generates electricity as an ancillary byproduct. Kalathil’s pioneering research in 2023 has demonstrated the capability of this collaboration to harness energy from the remnants of plastic waste, offering a glimpse into the realm of sustainable energy production.

Lycopene Production

Equally captivating is the revelation by Diao et al. (2023), who harnessed the chemical building blocks to synthesize lycopene using Rhodococcus jostii strain PET (RPET). This innovative approach utilizes PET hydrolysate as a sole carbon source to craft lycopene. Lycopene, a high-value carotenoid, is naturally found in many red, pink, and orange fruits and vegetables such as tomatoes, watermelons, pink grapefruits, and papayas. This compound is renowned for its antioxidative and anti-inflammatory attributes that have been widely researched in medical applications, such as cancer prevention and the lowering of cardiovascular and Alzheimer’s disease risk factors.

Photo by Josephine Baran on Unsplash

Challenges and Promising Trajectories

The journey towards leveraging Ideonella sakaiensis to mitigate plastic waste is undoubtedly promising yet challenging. The pace of biological degradation by this bacterium currently lags behind the production rate of PET plastics globally. Walter et al.’s (2022) insights in 2023 underscore this discrepancy, revealing that weeks are required to degrade a PET sample fully. However, beaconing optimism arises from the realm of enzyme engineering, exemplified by Sevilla et al. (2023) trailblazing efforts in 2023. This avenue offers a route to enhance the efficiency of the degradation process, illuminating a path toward bridging the gap between potential and feasibility.

In A Nutshell…

The development of Ideonella sakaiensis signals a new age in the face of the growing plastic menace. Its PET-degrading ability, orchestrated by PETase and MHETase, refers to a circular economy in which plastic trash is renewed. Terephthalic acid and ethylene glycol, which were created by this enzymatic alchemy, show potential as building blocks for innovation ranging from tastes to health therapies. Scalability and efficiency challenges urge collaborative solutions, bridging the gap between promise and reality. We set the groundwork for a plastic-resilient future by combining nature’s brilliance with human inventiveness.

References

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Diao, J., Hu, Y., Tian, Y., Carr, R., & Moon, T. S. (2023). Upcycling of poly(ethylene terephthalate) to produce high-value bio-products. Cell Reports, 42(1). https://doi.org/10.1016/j.celrep.2022.111908

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Hachisuka, S.-I., Nishii, T., & Yoshida, S. (2021). Development of a Targeted Gene Disruption System in the Poly(Ethylene Terephthalate)-Degrading Bacterium Ideonella sakaiensis and Its Applications to PETase and MHETase Genes. https://doi.org/10.1128/AEM

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National Renewable Energy Laboratory. (2021). Researchers Engineer Microorganisms To Tackle PET Plastic Pollution | News | NREL. https://www.nrel.gov/news/program/2021/researchers-engineer-microorganisms-to-tackle-pet-plastic-pollution.html

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Sevilla, M. E., Garcia, M. D., Perez-Castillo, Y., Armijos-Jaramillo, V., Casado, S., Vizuete, K., Debut, A., & Cerda-Mejía, L. (2023). Degradation of PET Bottles by an Engineered Ideonella sakaiensis PETase. Polymers, 15(7). https://doi.org/10.3390/polym15071779

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Daffa Dewa Saputra
Daffa Dewa Saputra

Written by Daffa Dewa Saputra

An inquisitive chemical engineer striving for sustainability and environmental harmony.

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